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Species belonging to selected taxon:
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST041120
species:
Theobroma cacao
miRNA family:
MIR171
source:
miRBase, original name:
tcc-MIR171e
(
MI0017493
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC
miRNA*
TGTTGGCTCGGTTCACTCAGA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTGGTTGCAATAGTCACTACGA
TGTTGGCTCGGTTCACTCAGA
CAAAATCAACCCTACGCTTCTCAAGCACACACACACAAAAAAAAGAGCTTTAGATTT
TGCGTATCTTCCATGTGTTT
TGATTGAGCCGTGCCAATATC
CTAGTGCCTTTTCAATTCAC
dot-bracket secondary structure
..(((((.((.((.(((((.((
(((((((.(((((((.(((((
((..........(((((.(((.((((....................)))).)))...
.))))).........)).))
))).))))))).)))))))))
.))))).)).)))))))...
SIMILARITIES
miRBase
rco-MIR171f
:
0.0000001
PMRD
vvi-miR171c
:
0.000002
microPC
miR171
:
0.000002
UniProt
no hits
RFAM
MIR171_1: 0.0000002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"